Identification of differentially expressed miRNA 48 h after cerebral ischemia–reperfusion injury in mice by the technique of miRNA microarray

Publication: Canadian Journal of Physiology and Pharmacology9 June 2020https://doi.org/10.1139/cjpp-2019-0701

Abstract

The objective was to identify the differential expressed miRNA during cerebral ischemia–reperfusion injury (CIRI) process, thereby assisting in elucidating the mechanism of CIRI development and providing a potential target for CIRI prevention and treatment. Six mice were randomly assigned to two groups: control group and CIRI model group. A global cerebral IR model by four-vessel occlusion was prepared among the CIRI model group. Brain tissues were collected 48 h after reperfusion. Total RNA was extracted for each sample. miRNA microarrays were employed to detect the differentially expressed miRNA between the CIRI group and the control group. One differentially expressed miRNA was selected for verification by PCR. Compared with the control group, 69 miRNAs were significantly differential expressed in samples of the CIRI group, among which 50 miRNAs were upregulated and 19 miRNAs were downregulated. The real-time qPCR results indicated that the results of the miRNA microarray were reliable. A number of miRNAs were significantly regulated in the CIRI model, which suggested that miRNA was closely associated with the pathological alterations after ischemia. These identified miRNAs may provide directions and targets for the future pathological research of CIRI.

Résumé

Cette étude avait pour but de mettre en évidence le miARN exprimé de façon différentielle au cours d’un processus de lésions d’ischémie–reperfusion cérébrales (LIRC), et donc de contribuer à élucider le mode d’action de la présentation de LIRC et de cerner des cibles éventuelles pour la prévention et le traitement des LIRC. Nous avons réparti aléatoirement six souris dans deux groupes : témoin et modèle de LIRC. Nous avons préparé un modèle d’IR cérébrale globale par l’occlusion de quatre vaisseaux dans le groupe LIRC. Nous avons prélevé du tissu cérébral 48 h après la reperfusion. Nous avons extrait de l’ARN total pour chaque échantillon. À l’aide de biopuces de miARN, nous avons tenté de mettre en évidence le miARN exprimé de façon différentielle entre les groupes LIRC et témoin. Nous avons sélectionné un miARN exprimé de manière différentielle aux fins de vérification par PCR. Comparativement au groupe témoin, 69 miARN s’exprimaient de manière différentielle de façon notable dans les échantillons du groupe LIRC, parmi lesquels 50 miARN étaient régulés à la hausse et 19 miARN étaient régulés à la baisse. Les données de PCR quantitatif en temps réel ont montré que les résultats obtenus à l’aide de la biopuce de miARN pouvaient être considérés comme étant fiables. En conclusion, un certain nombre de miARN étaient régulés de façon notable dans un modèle de LIRC, ce qui laissait entendre que le miARN serait associé de près aux modifications pathologiques observées après une ischémie. Les miARN ainsi mis en évidence pourraient permettre d’obtenir des avenues et des cibles pour des recherches futures de pathologie portant sur les LIRC. [Traduit par la Rédaction]
Get full access to this article.

View all available purchase options and get full access to this article.

References

Bei Y., Li M., Cheng X., Chen J., He F., and Zhang L. 2016. The mechanism and protective effect of miR-29c on cerebral ischemia-reperfusion injury in rats. Chin. J. Comp. Med. 26(11): 31–37.
Bénard J. and Douc-Rasy S. 2005. Micro-RNA and oncogenesis. Bull. Cancer, 92(9): 757–762.
Chan J.A., Krichevsky A.M., and Kosik K.S. 2005. MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells. Cancer Res. 65(14): 6029–6033.
Chang H. and Lu Z. 2016. Effect of miRNA-151a-3p on ischemia-reperfusion nerve damage in rats and mechanism. Chin. J. Exp. Surg. 33(3): 678–681.
Deng J. 2010. Progression of regulation of miRNAs on ischemia reperfusion injury. Int. Urol. Nephrol. 2(3): 223–225.
El Ouaamari A., Baroukh N., Martens G.A., Lebrun P., Pipeleers D., and van Obberghen E. 2008. miR-375 targets 3′-phosphoinositide-dependent protein kinase-1 and regulates glucose-induced biological responses in pancreatic beta-cells. Diabetes, 57(10): 2708–2717.
Fan C., Ding P., Zhang W., Wen Z., Yu D., Wang S., and Mo X. 2015. Expression changes of miRNAs in cerebral ischemia-reperfusion injury after deep hypothermic low flow in mice. Int. J. Cerebrovasc. Dis. 23: 354–358.
Giraldez A.J., Mishima Y., Rihel J., Grocock R.J., Van Dongen S., Inoue K., et al. 2006. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science, 312(5770): 75–79.
Jeyaseelan K., Lim K.Y., and Armugam A. 2008. MicroRNA expression in the blood and brain of rats subjected to transient focal ischemia by middle cerebral artery occlusion. Stroke, 39(3): 959–966.
Ji Y., Yan X., Hu Y., Xue H., Sun J., Chen H., et al. 2017. DhHP-6 attenuates cerebral ischemia-reperfusion injury in rats through the inhibition of apoptosis. Mol. Med. Rep. 16(5): 7229–7236.
Lagos-Quintana M., Rauhut R., Lendeckel W., and Tuschl T. 2001. Identification of novel genes coding for small expressed RNAs. Science, 294: 853–858.
Lei L., Lihua L., and Yukui M. 2016. Research progress on mechanisms of cerebral ischemia-reperfusion injury. J. Pharm. Res. 35: 542–545.
Lopez A.D., Mathers C.D., Ezzati M., Jamison D.T., and Murray C.J. 2006. Global and regional burden of disease and risk factors, 2001: systematic analysis of population health data. Lancet (London), 367(9524): 1747–1757.
Min X.L., Wang T.Y., Cao Y., Liu J., Li J.T., and Wang T.H. 2015. MicroRNAs: a novel promising therapeutic target for cerebral ischemia/reperfusion injury? Neural Regen. Res. 10(11): 1799–1808.
Ouyang Y.B. and Giffard R.G. 2013. MicroRNAs regulate the chaperone network in cerebral ischemia. Transl. Stroke Res. 4(6): 693–703.
Pekarsky Y., Santanam U., Cimmino A., Palamarchuk A., Efanov A., Maximov V., et al. 2006. Tcl1 expression in chronic lymphocytic leukemia is regulated by miR-29 and miR-181. Cancer Res. 66(24): 11590–11593.
Qi P., Han J.X., Lu Y.Q., Wang C., and Bu F.F. 2006. Virus-encoded microRNAs: future therapeutic targets? Cell. Mol. Immunol. 3(6): 411–419.
Reid G., Kirschner M.B., and van Zandwijk N. 2011. Circulating microRNAs: Association with disease and potential use as biomarkers. Crit. Rev. Oncol. Hemat. 80(2): 193–208.
Rui Li K.C. and Jin Y. 2016. The regulation of miRNA-29 on cerebral ischemia–reperfusion injury of Wistar mice. Heilongjiang Med. Pharm. 39(3): 5–7.
Thomson J.M., Parker J., Perou C.M., and Hammond S.M. 2004. A custom microarray platform for analysis of microRNA gene expression. Nat. Methods, 1(1): 47–53.
Virgintino D., Girolamo F., Rizzi M., Ahmedli N., Sadowska G.B., Stopa E.G., et al. 2014. Ischemia/reperfusion-induced neovascularization in the cerebral cortex of the ovine fetus. J. Neuropath. Exp. Neur. 73(6): 495–506.
Wang G.S. and Geng D.Q. 2011. Recent studies on mechanisms of cerebral ischemia/reperfusion injury. Med. Recapitulate, 17(24): 3753.
Zhai F., Zhang X., Guan Y., Yang X., Li Y., Song G., and Guan L. 2012. Expression profiles of microRNAs after focal cerebral ischemia/reperfusion injury in rats. Neural Regener. Res. 7(12): 917–923.
Zhang C. 2008. MicroRNomics: a newly emerging approach for disease biology. Physiol. Genomics, 33(2): 139–147.
Zhu X., Yan Y., Di Z., Wang T., He F., Wang X., et al. 2018. Expression of miRNA-155 in cerebral cortex tissue of rats with cerebral ischemia-reperfusion injury and its significance. J. Jilin Univ. Med. Ed. 44(6): 1144–1149.

Information & Authors

Information

Published In

Canadian Journal of Physiology and Pharmacology cover image
Canadian Journal of Physiology and Pharmacology
Volume 98Number 12December 2020
Pages: 855 - 860

History

Received: 30 August 2019
Accepted: 18 April 2020
Published online: 9 June 2020

Permissions

Request permissions for this article.

Key Words

  1. miRNA
  2. CIRI
  3. microarray
  4. differential expression

Mots-clés

  1. miARN
  2. lésions d’ischémie–reperfusion cérébrales
  3. biopuce
  4. expression différentielle

Authors

Affiliations

Yaping Zhang
The Heart Center, Beijing Friendship Hospital, Capital Medical University, Beijing, China 100050.
Nan Ding
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.
Hanlu Yi
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.
Yudong Zhao
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.
Zankai Ye
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.
Lei Shen
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.
Zhiqiang Li
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.
Yaobin Zhu kjw12w@sohu.com
Cardiovascular Surgery II, Beijing Children’s Hospital, Capital Medical University, National Center for Children’s Health, Beijing, China 100045.

Notes

Canadian Science Publishing assumes no responsibility or liability for any errors or omissions in the content of this article. This article is published on an “as is” basis with no guarantees of completeness and (or) accuracy, since our repeated attempts to contact all the authors to approve or modify the galley proofs were unsuccessful.
Copyright remains with the author(s) or their institution(s). Permission for reuse (free in most cases) can be obtained from copyright.com.

Metrics & Citations

Metrics

Other Metrics

Citations

Cite As

Export Citations

If you have the appropriate software installed, you can download article citation data to the citation manager of your choice. Simply select your manager software from the list below and click Download.

There are no citations for this item

View Options

Get Access

Login options

Check if you access through your login credentials or your institution to get full access on this article.

Subscribe

Click on the button below to subscribe to Canadian Journal of Physiology and Pharmacology

Purchase options

Purchase this article to get full access to it.

Restore your content access

Enter your email address to restore your content access:

Note: This functionality works only for purchases done as a guest. If you already have an account, log in to access the content to which you are entitled.

View options

Full Text

Open Full Text

PDF

Download PDF

Media

Media

Other

Tables

Share Options

Share

Share the article link

Share with email

Share on social media